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00028 #ifdef HAVE_CONFIG_H
00029 #include <config.h>
00030 #endif
00031
00032
00033
00034
00035
00036 #include "crires_recipe.h"
00037
00038 #include "crires_model_kernel.h"
00039 #include "crires_combine.h"
00040 #include "crires_extract.h"
00041 #include "crires_photom.h"
00042 #include "crires_wlcalib.h"
00043
00044
00045
00046
00047
00048 #define RECIPE_STRING "crires_spec_jitter"
00049
00050
00051
00052
00053
00054 static int crires_spec_jitter_save(const cpl_imagelist **,
00055 const cpl_imagelist *, const cpl_imagelist *, const cpl_table **,
00056 const cpl_imagelist *, const cpl_imagelist *,
00057 const cpl_parameterlist *, cpl_frameset *) ;
00058
00059 static char crires_spec_jitter_description[] =
00060 "crires_spec_jitter -- Observation recipe with or without nodding/jittering\n"
00061 "The files listed in the Set Of Frames (sof-file) must be tagged:\n"
00062 " raw-file.fits "CRIRES_SPEC_JITTER_RAW" or\n"
00063 " raw-file.fits "CRIRES_SPEC_JITTER_J_RAW" or\n"
00064 " raw-file.fits "CRIRES_SPEC_JITTER_STD_RAW" or\n"
00065 " raw-file.fits "CRIRES_SPEC_JITTER_J_STD_RAW" or\n"
00066 " raw-file.fits "CRIRES_SPEC_NODDING_OBJECT_RAW" or\n"
00067 " raw-file.fits "CRIRES_SPEC_NODDING_SKY_RAW" or\n"
00068 " raw-file.fits "CRIRES_SPEC_GENERIC_OBJECT_RAW" or\n"
00069 " raw-file.fits "CRIRES_SPEC_GENERIC_SKY_RAW" or\n"
00070 " raw-file.fits "CRIRES_SPEC_NODDING_RAW" or\n"
00071 " raw-file.fits "CRIRES_SPEC_NODDING_J_RAW" or\n"
00072 " raw-file.fits "CRIRES_SPEC_NODDING_STD_RAW" or\n"
00073 " raw-file.fits "CRIRES_SPEC_NODDING_J_STD_RAW" or\n"
00074 " flat-file.fits "CRIRES_CALPRO_FLAT" or\n"
00075 " bpm-file.fits "CRIRES_CALPRO_BPM" or\n"
00076 " dark-file.fits "CRIRES_CALPRO_DARK" or\n"
00077 " detlin-file.fits "CRIRES_CALPRO_COEFFS_CUBE" or\n"
00078 " wavecal-file.fits "CRIRES_CALPRO_WAVE" or\n"
00079 " catalog-file.fits "CRIRES_CALPRO_OH_CAT" or\n"
00080 " catalog-file.fits "CRIRES_CALPRO_HITRAN_CAT" or\n"
00081 " stdstar-file.fits "CRIRES_CALPRO_STD_PHOTOFLUX" or\n"
00082 " model-config-file.fits "CRIRES_CALPRO_MODEL_CONFIG".\n"
00083 "\n"
00084 "In the case of a nodding observation, in order not to degrade the \n"
00085 " instrument high resolution, the combined images using only NODA\n"
00086 " or NODB nodding positions can be produced on request. (see --onlyA/B)\n"
00087 " In this case, the following spectrum extraction can be applied \n"
00088 " either on the usual combined image or on those NODA/B combined\n"
00089 " images (see --comb_used).\n"
00090 "\n"
00091 "This recipe produces 6 to 11 files:\n"
00092 " The combined image (PRO TYPE = "CRIRES_PROTYPE_COMBINED")\n"
00093 " The contribution map (PRO TYPE = "CRIRES_PROTYPE_CONTRIB")\n"
00094 " The combined image using only Nodding A frames (optional)\n"
00095 " (PRO TYPE = "CRIRES_PROTYPE_COMBINED")\n"
00096 " The contribution map using only Nodding A frames (optional)\n"
00097 " (PRO TYPE = "CRIRES_PROTYPE_CONTRIB")\n"
00098 " The combined image using only Nodding B frames (optional)\n"
00099 " (PRO TYPE = "CRIRES_PROTYPE_COMBINED")\n"
00100 " The contribution map using only Nodding B frames (optional)\n"
00101 " (PRO TYPE = "CRIRES_PROTYPE_CONTRIB")\n"
00102 " The table with the extracted spectrum\n"
00103 " (PRO TYPE = "CRIRES_PROTYPE_SPEC_WL") or\n"
00104 " (PRO TYPE = "CRIRES_PROTYPE_SENSIT") or\n"
00105 " (PRO TYPE = "CRIRES_PROTYPE_CONVERS")\n"
00106 " The profile image (PRO TYPE = "CRIRES_PROTYPE_PROFILE")\n"
00107 " The background map (PRO TYPE = "CRIRES_PROTYPE_BGD_MAP")\n"
00108 " The wavelength map (PRO TYPE = "CRIRES_PROTYPE_WL_MAP")\n"
00109 " The wavelength map from the model (optional)\n"
00110 " (PRO TYPE = "CRIRES_PROTYPE_WL_MAP")\n" ;
00111
00112 CRIRES_RECIPE_DEFINE(crires_spec_jitter,
00113 CRIRES_PARAM_WAVES |
00114 CRIRES_PARAM_DISPLAY |
00115 CRIRES_PARAM_REFINE |
00116 CRIRES_PARAM_ONLYA |
00117 CRIRES_PARAM_ONLYB |
00118 CRIRES_PARAM_COMB_USED |
00119 CRIRES_PARAM_BLIND |
00120 CRIRES_PARAM_HOR_SIZE |
00121 CRIRES_PARAM_SPEC_HSIZE |
00122 CRIRES_PARAM_KAPPA |
00123 CRIRES_PARAM_CLOSING_HSIZE |
00124 CRIRES_PARAM_CLEAN_RATE |
00125 CRIRES_PARAM_REJECT |
00126 CRIRES_PARAM_SPEC_ZONE |
00127 CRIRES_PARAM_WL_ERROR |
00128 CRIRES_PARAM_XC_LIMIT |
00129 CRIRES_PARAM_WL_LOG |
00130 CRIRES_PARAM_WL_NOLIMIT |
00131 CRIRES_PARAM_WL_NBSAMPLES |
00132 CRIRES_PARAM_Y_POS_CHIP1 |
00133 CRIRES_PARAM_Y_POS_CHIP2 |
00134 CRIRES_PARAM_Y_POS_CHIP3 |
00135 CRIRES_PARAM_Y_POS_CHIP4 |
00136 CRIRES_PARAM_Y_WIDTH |
00137 CRIRES_PARAM_DEGREE |
00138 CRIRES_PARAM_WL_CLEAN,
00139 "Observation recipe",
00140 crires_spec_jitter_description) ;
00141
00142
00143
00144
00145
00146 static struct {
00147
00148 int comb_blind ;
00149 int comb_refine ;
00150 int comb_onlyA ;
00151 int comb_onlyB ;
00152 crires_comb_method comb_used ;
00153 double wstart[CRIRES_NB_DETECTORS] ;
00154 double wstop[CRIRES_NB_DETECTORS] ;
00155 int wl_nolimit ;
00156 int wl_log ;
00157 const char * wl_ypos_c1 ;
00158 const char * wl_ypos_c2 ;
00159 const char * wl_ypos_c3 ;
00160 const char * wl_ypos_c4 ;
00161 int wl_width ;
00162 double wl_fwhm ;
00163 double wl_slitw ;
00164 int wl_degree ;
00165 double wl_err ;
00166 int wl_samples ;
00167 int wl_clean ;
00168 double wl_xclimit ;
00169 int wl_ppm ;
00170 int extr_box_hor_size ;
00171 int extr_spec_hsize ;
00172 double extr_kappa ;
00173 int extr_closing_hs ;
00174 int extr_clean_rate ;
00175 int extr_rej_left ;
00176 int extr_rej_right ;
00177 int extr_spec_starty ;
00178 int extr_spec_stopy ;
00179 int display ;
00180
00181 crires_illum_period period ;
00182 int std_mode ;
00183 int nodding ;
00184 int qc_specpos[CRIRES_NB_DETECTORS] ;
00185 int qc_specwrec[CRIRES_NB_DETECTORS] ;
00186 int qc_specwopt[CRIRES_NB_DETECTORS] ;
00187 double qc_specoptmed[CRIRES_NB_DETECTORS] ;
00188 double qc_s2nmed[CRIRES_NB_DETECTORS] ;
00189 double qc_wlxc[CRIRES_NB_DETECTORS] ;
00190 double qc_wlcent[CRIRES_NB_DETECTORS] ;
00191 double qc_wldisp[CRIRES_NB_DETECTORS] ;
00192 double qc_sensmed[CRIRES_NB_DETECTORS] ;
00193 double qc_convmed[CRIRES_NB_DETECTORS] ;
00194 double qc_thromed[CRIRES_NB_DETECTORS] ;
00195 double qc_fwhm_comb_pix[CRIRES_NB_DETECTORS] ;
00196 double qc_fwhm_comb_as[CRIRES_NB_DETECTORS] ;
00197 double qc_fwhm_prof_pix[CRIRES_NB_DETECTORS] ;
00198 double qc_fwhm_prof_as[CRIRES_NB_DETECTORS] ;
00199 double qc_fwhm_diff[CRIRES_NB_DETECTORS] ;
00200 } crires_spec_jitter_config ;
00201
00202
00203
00204
00205
00206
00213
00214 static int crires_spec_jitter(
00215 cpl_frameset * frameset,
00216 const cpl_parameterlist * parlist)
00217 {
00218 const char * sval ;
00219 const char * wl_ypos ;
00220 cpl_frameset * rawframes ;
00221 cpl_frameset * skyframes ;
00222 const char * fname ;
00223 cpl_frame * fr ;
00224 double tot_ndit ;
00225 const char * flat ;
00226 const char * dark ;
00227 const char * bpm ;
00228 const char * detlin ;
00229 const char * wavecal ;
00230 const char * oh_cat ;
00231 const char * hitran_cat ;
00232 const char * std_star ;
00233 const char * cfg_model ;
00234 cpl_propertylist * plist ;
00235 double wmin, wmax ;
00236 cpl_table * std_star_tab ;
00237 cpl_bivector * std_star_biv ;
00238 cpl_imagelist ** comblist ;
00239 int comblist_offset ;
00240 cpl_table * wave_tab[CRIRES_NB_DETECTORS] ;
00241 cpl_table * extr_tab[CRIRES_NB_DETECTORS] ;
00242 cpl_image * profiles[CRIRES_NB_DETECTORS] ;
00243 cpl_image * bg_maps[CRIRES_NB_DETECTORS] ;
00244 cpl_imagelist * prof_list ;
00245 cpl_imagelist * bgmap_list ;
00246 cpl_imagelist * wl_map_loc ;
00247 cpl_imagelist * wl_map_model_loc ;
00248 cpl_vector ** wavelengths ;
00249 cpl_vector * wave_ypos ;
00250 int pix ;
00251 int i, j ;
00252
00253
00254 rawframes = NULL ;
00255 skyframes = NULL ;
00256 comblist_offset = -1 ;
00257 for (i=0 ; i<CRIRES_NB_DETECTORS ; i++) {
00258 crires_spec_jitter_config.qc_specpos[i] = -1 ;
00259 crires_spec_jitter_config.qc_specwrec[i] = -1 ;
00260 crires_spec_jitter_config.qc_specwopt[i] = -1 ;
00261 crires_spec_jitter_config.qc_specoptmed[i] = -1.0 ;
00262 crires_spec_jitter_config.qc_s2nmed[i] = -1.0 ;
00263 crires_spec_jitter_config.qc_wlxc[i] = -1.0 ;
00264 crires_spec_jitter_config.qc_wlcent[i] = -1.0 ;
00265 crires_spec_jitter_config.qc_wldisp[i] = -1.0 ;
00266 crires_spec_jitter_config.qc_sensmed[i] = -1.0 ;
00267 crires_spec_jitter_config.qc_convmed[i] = -1.0 ;
00268 crires_spec_jitter_config.qc_thromed[i] = -1.0 ;
00269 crires_spec_jitter_config.qc_fwhm_comb_pix[i] = -1.0 ;
00270 crires_spec_jitter_config.qc_fwhm_comb_as[i] = -1.0 ;
00271 crires_spec_jitter_config.qc_fwhm_prof_pix[i] = -1.0 ;
00272 crires_spec_jitter_config.qc_fwhm_prof_as[i] = -1.0 ;
00273 crires_spec_jitter_config.qc_fwhm_diff[i] = -1.0 ;
00274 }
00275 crires_spec_jitter_config.wl_ppm = 0 ;
00276 crires_spec_jitter_config.wl_slitw = 2.0 ;
00277 crires_spec_jitter_config.wl_fwhm = 2.0 ;
00278
00279
00280 crires_spec_jitter_config.display = crires_parameterlist_get_int(parlist,
00281 RECIPE_STRING, CRIRES_PARAM_DISPLAY) ;
00282 crires_spec_jitter_config.comb_refine = crires_parameterlist_get_bool(
00283 parlist, RECIPE_STRING, CRIRES_PARAM_REFINE) ;
00284 crires_spec_jitter_config.comb_onlyA = crires_parameterlist_get_bool(
00285 parlist, RECIPE_STRING, CRIRES_PARAM_ONLYA) ;
00286 crires_spec_jitter_config.comb_onlyB = crires_parameterlist_get_bool(
00287 parlist, RECIPE_STRING, CRIRES_PARAM_ONLYB) ;
00288 sval = crires_parameterlist_get_string(parlist, RECIPE_STRING,
00289 CRIRES_PARAM_COMB_USED) ;
00290 if (!strcmp(sval, "NODA"))
00291 crires_spec_jitter_config.comb_used = CRIRES_COMB_METHOD_NODA ;
00292 else if (!strcmp(sval, "NODB"))
00293 crires_spec_jitter_config.comb_used = CRIRES_COMB_METHOD_NODB ;
00294 else if (!strcmp(sval, "COMB"))
00295 crires_spec_jitter_config.comb_used = CRIRES_COMB_METHOD_COMB ;
00296 else {
00297 cpl_msg_error(__func__, "Invalid combination method specified");
00298 return -1;
00299 }
00300 crires_spec_jitter_config.comb_blind = crires_parameterlist_get_bool(
00301 parlist, RECIPE_STRING, CRIRES_PARAM_BLIND) ;
00302 sval = crires_parameterlist_get_string(parlist, RECIPE_STRING,
00303 CRIRES_PARAM_WAVES) ;
00304 if (sscanf(sval, "%lg,%lg,%lg,%lg,%lg,%lg,%lg,%lg",
00305 &crires_spec_jitter_config.wstart[0],
00306 &crires_spec_jitter_config.wstop[0],
00307 &crires_spec_jitter_config.wstart[1],
00308 &crires_spec_jitter_config.wstop[1],
00309 &crires_spec_jitter_config.wstart[2],
00310 &crires_spec_jitter_config.wstop[2],
00311 &crires_spec_jitter_config.wstart[3],
00312 &crires_spec_jitter_config.wstop[3])!=2*CRIRES_NB_DETECTORS){
00313 cpl_error_set(__func__, CPL_ERROR_ILLEGAL_INPUT) ;
00314 return -1 ;
00315 }
00316 crires_spec_jitter_config.wl_log = crires_parameterlist_get_bool(parlist,
00317 RECIPE_STRING, CRIRES_PARAM_WL_LOG) ;
00318 crires_spec_jitter_config.wl_nolimit = crires_parameterlist_get_bool(
00319 parlist, RECIPE_STRING, CRIRES_PARAM_WL_NOLIMIT) ;
00320 crires_spec_jitter_config.wl_degree = crires_parameterlist_get_int(parlist,
00321 RECIPE_STRING, CRIRES_PARAM_DEGREE) ;
00322 crires_spec_jitter_config.wl_err = crires_parameterlist_get_double(parlist,
00323 RECIPE_STRING, CRIRES_PARAM_WL_ERROR) ;
00324 crires_spec_jitter_config.wl_xclimit = crires_parameterlist_get_double(
00325 parlist, RECIPE_STRING, CRIRES_PARAM_XC_LIMIT) ;
00326 crires_spec_jitter_config.wl_samples = crires_parameterlist_get_int(parlist,
00327 RECIPE_STRING, CRIRES_PARAM_WL_NBSAMPLES) ;
00328 crires_spec_jitter_config.wl_clean = crires_parameterlist_get_bool(parlist,
00329 RECIPE_STRING, CRIRES_PARAM_WL_CLEAN) ;
00330 crires_spec_jitter_config.wl_ypos_c1 = crires_parameterlist_get_string(
00331 parlist, RECIPE_STRING, CRIRES_PARAM_Y_POS_CHIP1) ;
00332 crires_spec_jitter_config.wl_ypos_c2 = crires_parameterlist_get_string(
00333 parlist, RECIPE_STRING, CRIRES_PARAM_Y_POS_CHIP2) ;
00334 crires_spec_jitter_config.wl_ypos_c3 = crires_parameterlist_get_string(
00335 parlist, RECIPE_STRING, CRIRES_PARAM_Y_POS_CHIP3) ;
00336 crires_spec_jitter_config.wl_ypos_c4 = crires_parameterlist_get_string(
00337 parlist, RECIPE_STRING, CRIRES_PARAM_Y_POS_CHIP4) ;
00338 crires_spec_jitter_config.wl_width= crires_parameterlist_get_int(parlist,
00339 RECIPE_STRING, CRIRES_PARAM_Y_WIDTH) ;
00340 crires_spec_jitter_config.extr_box_hor_size = crires_parameterlist_get_int(
00341 parlist, RECIPE_STRING, CRIRES_PARAM_HOR_SIZE) ;
00342 crires_spec_jitter_config.extr_spec_hsize = crires_parameterlist_get_int(
00343 parlist, RECIPE_STRING, CRIRES_PARAM_SPEC_HSIZE) ;
00344 crires_spec_jitter_config.extr_kappa = crires_parameterlist_get_double(
00345 parlist, RECIPE_STRING, CRIRES_PARAM_KAPPA) ;
00346 crires_spec_jitter_config.extr_closing_hs = crires_parameterlist_get_int(
00347 parlist, RECIPE_STRING, CRIRES_PARAM_CLOSING_HSIZE) ;
00348 crires_spec_jitter_config.extr_clean_rate = crires_parameterlist_get_double(
00349 parlist, RECIPE_STRING, CRIRES_PARAM_CLEAN_RATE) ;
00350 sval = crires_parameterlist_get_string(parlist, RECIPE_STRING,
00351 CRIRES_PARAM_REJECT) ;
00352 if (sscanf(sval, "%d,%d",
00353 &crires_spec_jitter_config.extr_rej_left,
00354 &crires_spec_jitter_config.extr_rej_right)!=2) {
00355 cpl_error_set(__func__, CPL_ERROR_ILLEGAL_INPUT) ;
00356 return -1 ;
00357 }
00358 sval = crires_parameterlist_get_string(parlist, RECIPE_STRING,
00359 CRIRES_PARAM_SPEC_ZONE) ;
00360 if (sscanf(sval, "%d,%d",
00361 &crires_spec_jitter_config.extr_spec_starty,
00362 &crires_spec_jitter_config.extr_spec_stopy)!=2) {
00363 cpl_error_set(__func__, CPL_ERROR_ILLEGAL_INPUT) ;
00364 return -1 ;
00365 }
00366
00367
00368 if (crires_dfs_set_groups(frameset, "crires_spec_jitter")) {
00369 cpl_msg_error(__func__, "Cannot identify RAW and CALIB frames") ;
00370 cpl_error_set(__func__, CPL_ERROR_ILLEGAL_INPUT) ;
00371 return -1 ;
00372 }
00373
00374
00375 flat = crires_extract_filename(frameset, CRIRES_CALPRO_FLAT) ;
00376 dark = crires_extract_filename(frameset, CRIRES_CALPRO_DARK) ;
00377 bpm = crires_extract_filename(frameset, CRIRES_CALPRO_BPM) ;
00378 detlin = crires_extract_filename(frameset, CRIRES_CALPRO_COEFFS_CUBE) ;
00379 wavecal = crires_extract_filename(frameset, CRIRES_CALPRO_WAVE) ;
00380 oh_cat = crires_extract_filename(frameset, CRIRES_CALPRO_OH_CAT) ;
00381 hitran_cat = crires_extract_filename(frameset, CRIRES_CALPRO_HITRAN_CAT) ;
00382 std_star = crires_extract_filename(frameset,CRIRES_CALPRO_STD_PHOTOFLUX);
00383 cfg_model = crires_extract_filename(frameset, CRIRES_CALPRO_MODEL_CONFIG);
00384
00385
00386 if ((rawframes = crires_extract_frameset(frameset,
00387 CRIRES_SPEC_JITTER_RAW)) != NULL) {
00388 crires_spec_jitter_config.nodding = 0 ;
00389 crires_spec_jitter_config.std_mode = 0 ;
00390 } else if ((rawframes = crires_extract_frameset(frameset,
00391 CRIRES_SPEC_JITTER_J_RAW)) != NULL) {
00392 crires_spec_jitter_config.nodding = 0 ;
00393 crires_spec_jitter_config.std_mode = 0 ;
00394 } else if ((rawframes = crires_extract_frameset(frameset,
00395 CRIRES_SPEC_NODDING_OBJECT_RAW)) != NULL) {
00396 crires_spec_jitter_config.nodding = 1 ;
00397 crires_spec_jitter_config.std_mode = 0 ;
00398 } else if ((rawframes = crires_extract_frameset(frameset,
00399 CRIRES_SPEC_GENERIC_OBJECT_RAW)) != NULL) {
00400 crires_spec_jitter_config.nodding = 0 ;
00401 crires_spec_jitter_config.std_mode = 0 ;
00402 } else if ((rawframes = crires_extract_frameset(frameset,
00403 CRIRES_SPEC_NODDING_RAW)) != NULL) {
00404 crires_spec_jitter_config.nodding = 1 ;
00405 crires_spec_jitter_config.std_mode = 0 ;
00406 } else if ((rawframes = crires_extract_frameset(frameset,
00407 CRIRES_SPEC_NODDING_J_RAW)) != NULL) {
00408 crires_spec_jitter_config.nodding = 1 ;
00409 crires_spec_jitter_config.std_mode = 0 ;
00410 } else if ((rawframes = crires_extract_frameset(frameset,
00411 CRIRES_SPEC_JITTER_STD_RAW)) != NULL) {
00412 crires_spec_jitter_config.nodding = 0 ;
00413 crires_spec_jitter_config.std_mode = 1 ;
00414 } else if ((rawframes = crires_extract_frameset(frameset,
00415 CRIRES_SPEC_JITTER_J_STD_RAW)) != NULL) {
00416 crires_spec_jitter_config.nodding = 0 ;
00417 crires_spec_jitter_config.std_mode = 1 ;
00418 } else if ((rawframes = crires_extract_frameset(frameset,
00419 CRIRES_SPEC_NODDING_STD_RAW)) != NULL) {
00420 crires_spec_jitter_config.nodding = 1 ;
00421 crires_spec_jitter_config.std_mode = 1 ;
00422 } else if ((rawframes = crires_extract_frameset(frameset,
00423 CRIRES_SPEC_NODDING_J_STD_RAW)) != NULL) {
00424 crires_spec_jitter_config.nodding = 1 ;
00425 crires_spec_jitter_config.std_mode = 1 ;
00426 } else {
00427 cpl_msg_error(__func__, "No raw frame in input") ;
00428 cpl_error_set(__func__, CPL_ERROR_ILLEGAL_INPUT) ;
00429 return -1 ;
00430 }
00431
00432
00433 if (crires_spec_jitter_config.nodding == 0) {
00434
00435 if (crires_spec_jitter_config.comb_used != CRIRES_COMB_METHOD_COMB) {
00436 cpl_msg_warning(__func__,
00437 "NODA or NODB can only be used in nodding mode") ;
00438 crires_spec_jitter_config.comb_used = CRIRES_COMB_METHOD_COMB ;
00439 }
00440
00441
00442 if (crires_spec_jitter_config.comb_onlyA) {
00443 cpl_msg_warning(__func__, "onlyA only possible in nodding mode") ;
00444 crires_spec_jitter_config.comb_onlyA = 0 ;
00445 }
00446 if (crires_spec_jitter_config.comb_onlyB) {
00447 cpl_msg_warning(__func__, "onlyB only possible in nodding mode") ;
00448 crires_spec_jitter_config.comb_onlyB = 0 ;
00449 }
00450 }
00451 if ((crires_spec_jitter_config.comb_used == CRIRES_COMB_METHOD_NODA)
00452 && (crires_spec_jitter_config.comb_onlyA == 0)) {
00453 cpl_msg_warning(__func__,
00454 "You forgot to require the NODA image to be produced !") ;
00455 crires_spec_jitter_config.comb_onlyA = 1 ;
00456 }
00457 if ((crires_spec_jitter_config.comb_used == CRIRES_COMB_METHOD_NODB)
00458 && (crires_spec_jitter_config.comb_onlyB == 0)) {
00459 cpl_msg_warning(__func__,
00460 "You forgot to require the NODB image to be produced !") ;
00461 crires_spec_jitter_config.comb_onlyB = 1 ;
00462 }
00463
00464
00465 if (crires_spec_jitter_config.comb_used == CRIRES_COMB_METHOD_COMB)
00466 comblist_offset = 0 ;
00467 else if (crires_spec_jitter_config.comb_used == CRIRES_COMB_METHOD_NODA)
00468 comblist_offset = 1 ;
00469 else if (crires_spec_jitter_config.comb_used == CRIRES_COMB_METHOD_NODB)
00470 comblist_offset = 2 ;
00471
00472
00473 skyframes = crires_extract_frameset(frameset, CRIRES_SPEC_NODDING_SKY_RAW) ;
00474 if (skyframes == NULL) {
00475 skyframes = crires_extract_frameset(frameset,
00476 CRIRES_SPEC_GENERIC_SKY_RAW) ;
00477 }
00478
00479
00480 crires_spec_jitter_config.period =
00481 crires_get_detector_illum_period(
00482 cpl_frame_get_filename(cpl_frameset_get_frame(rawframes, 0))) ;
00483 if (crires_spec_jitter_config.period == CRIRES_ILLUM_UNKNOWN) {
00484 cpl_msg_error(__func__,
00485 "Cannot determine the detector illumination period") ;
00486 cpl_frameset_delete(rawframes) ;
00487 if (skyframes != NULL) cpl_frameset_delete(skyframes) ;
00488 cpl_error_set(__func__, CPL_ERROR_ILLEGAL_INPUT) ;
00489 return -1 ;
00490 } else {
00491 crires_display_detector_illum(crires_spec_jitter_config.period) ;
00492 }
00493
00494
00495 fr = cpl_frameset_get_frame(rawframes, 0);
00496 tot_ndit = crires_get_totndit(cpl_frame_get_filename(fr)) ;
00497 if (tot_ndit < 0) {
00498 cpl_msg_error(__func__, "Cannot get the total number of NDIT") ;
00499 cpl_frameset_delete(rawframes) ;
00500 if (skyframes != NULL) cpl_frameset_delete(skyframes) ;
00501 cpl_error_set(__func__, CPL_ERROR_ILLEGAL_INPUT) ;
00502 return -1 ;
00503 }
00504 tot_ndit *= cpl_frameset_get_size(rawframes) ;
00505
00506
00507 cpl_msg_info(__func__, "Images combination") ;
00508 cpl_msg_indent_more() ;
00509 if ((comblist = crires_combine_imagelist(rawframes, skyframes,
00510 crires_spec_jitter_config.period,
00511 flat, dark, bpm, detlin,
00512 crires_spec_jitter_config.nodding,
00513 crires_spec_jitter_config.comb_blind,
00514 crires_spec_jitter_config.comb_refine,
00515 crires_spec_jitter_config.comb_onlyA,
00516 crires_spec_jitter_config.comb_onlyB)) == NULL) {
00517 cpl_msg_error(__func__, "Cannot combine the images") ;
00518 cpl_frameset_delete(rawframes) ;
00519 if (skyframes != NULL) cpl_frameset_delete(skyframes) ;
00520 cpl_msg_indent_less() ;
00521 cpl_error_set(__func__, CPL_ERROR_ILLEGAL_INPUT) ;
00522 return -1 ;
00523 }
00524 if (skyframes != NULL) cpl_frameset_delete(skyframes) ;
00525 cpl_msg_indent_less() ;
00526
00527
00528 cpl_msg_info(__func__, "Spectrum extraction") ;
00529 cpl_msg_indent_more() ;
00530 for (i=0 ; i<CRIRES_NB_DETECTORS ; i++) {
00531 cpl_msg_info(__func__, "Chip number %d extraction", i+1) ;
00532 cpl_msg_indent_more() ;
00533 if ((extr_tab[i] = crires_extract_spectrum(
00534 cpl_imagelist_get(comblist[0+2*comblist_offset], i),
00535 cpl_imagelist_get(comblist[1+2*comblist_offset], i),
00536 crires_spec_jitter_config.extr_box_hor_size,
00537 crires_spec_jitter_config.extr_spec_hsize,
00538 crires_spec_jitter_config.extr_kappa,
00539 crires_spec_jitter_config.extr_closing_hs,
00540 crires_spec_jitter_config.extr_clean_rate,
00541 crires_spec_jitter_config.extr_rej_left,
00542 crires_spec_jitter_config.extr_rej_right,
00543 crires_spec_jitter_config.extr_spec_starty,
00544 crires_spec_jitter_config.extr_spec_stopy,
00545 i+1,
00546 tot_ndit,
00547 crires_spec_jitter_config.period,
00548 &(crires_spec_jitter_config.qc_specpos[i]),
00549 &(crires_spec_jitter_config.qc_specwrec[i]),
00550 &(crires_spec_jitter_config.qc_specwopt[i]),
00551 &(crires_spec_jitter_config.qc_specoptmed[i]),
00552 &(crires_spec_jitter_config.qc_s2nmed[i]),
00553 &(profiles[i]),
00554 &(bg_maps[i]))) == NULL) {
00555 cpl_msg_error(__func__, "Cannot extract the spectrum") ;
00556 cpl_msg_indent_less() ;
00557 cpl_msg_indent_less() ;
00558 for (j=0 ; j<i ; j++)
00559 cpl_table_delete(extr_tab[j]) ;
00560 for (j=0 ; j<i ; j++)
00561 cpl_image_delete(profiles[j]) ;
00562 for (j=0 ; j<i ; j++)
00563 cpl_image_delete(bg_maps[j]) ;
00564 cpl_imagelist_delete(comblist[0]) ;
00565 cpl_imagelist_delete(comblist[1]) ;
00566 if (crires_spec_jitter_config.comb_onlyA) {
00567 cpl_imagelist_delete(comblist[2]) ;
00568 cpl_imagelist_delete(comblist[3]) ;
00569 }
00570 if (crires_spec_jitter_config.comb_onlyB) {
00571 cpl_imagelist_delete(comblist[4]) ;
00572 cpl_imagelist_delete(comblist[5]) ;
00573 }
00574 cpl_free(comblist) ;
00575 cpl_frameset_delete(rawframes) ;
00576 cpl_error_set(__func__, CPL_ERROR_ILLEGAL_INPUT) ;
00577 return -1 ;
00578 }
00579 cpl_msg_info(__func__, "Chip number %d FWHM Computation", i+1) ;
00580 if (crires_extract_qc_fwhm(
00581 cpl_imagelist_get(comblist[0+2*comblist_offset], i),
00582 profiles[i],
00583 &(crires_spec_jitter_config.qc_fwhm_comb_pix[i]),
00584 &(crires_spec_jitter_config.qc_fwhm_comb_as[i]),
00585 &(crires_spec_jitter_config.qc_fwhm_prof_pix[i]),
00586 &(crires_spec_jitter_config.qc_fwhm_prof_as[i]),
00587 &(crires_spec_jitter_config.qc_fwhm_diff[i])) == -1) {
00588 cpl_msg_warning(__func__, "Failed for FWHM computation") ;
00589 crires_spec_jitter_config.qc_fwhm_comb_pix[i] = -1.0 ;
00590 crires_spec_jitter_config.qc_fwhm_comb_as[i] = -1.0 ;
00591 crires_spec_jitter_config.qc_fwhm_prof_pix[i] = -1.0 ;
00592 crires_spec_jitter_config.qc_fwhm_prof_as[i] = -1.0 ;
00593 crires_spec_jitter_config.qc_fwhm_diff[i] = -1.0 ;
00594 }
00595 cpl_msg_indent_less() ;
00596 }
00597
00598
00599 prof_list = cpl_imagelist_new() ;
00600 bgmap_list = cpl_imagelist_new() ;
00601 for (i=0 ; i<CRIRES_NB_DETECTORS ; i++) {
00602 cpl_imagelist_set(prof_list, profiles[i], i) ;
00603 cpl_imagelist_set(bgmap_list, bg_maps[i], i) ;
00604 }
00605
00606
00607 for (i=1 ; i<CRIRES_NB_DETECTORS ; i++) {
00608 if (crires_spec_jitter_config.qc_specpos[i-1] > 0 &&
00609 crires_spec_jitter_config.qc_specpos[i] > 0 &&
00610 fabs(crires_spec_jitter_config.qc_specpos[i-1] -
00611 crires_spec_jitter_config.qc_specpos[i]) >
00612 CRIRES_SPEC_POS_TOLERANCE) {
00613 cpl_msg_warning(__func__,
00614 "The spectrum positions in chip %d and chip %d are too different: %d -> %d",
00615 i, i+1, crires_spec_jitter_config.qc_specpos[i-1],
00616 crires_spec_jitter_config.qc_specpos[i]) ;
00617 }
00618 }
00619 cpl_msg_indent_less() ;
00620
00621
00622 cpl_msg_info(__func__, "Wavelength Calibration") ;
00623 cpl_msg_indent_more() ;
00624 if (wavecal != NULL) {
00625
00626 cpl_msg_info(__func__, "Use the provided solution") ;
00627 for (i=0 ; i<CRIRES_NB_DETECTORS ; i++) {
00628 if ((wave_tab[i] = crires_load_table_check(wavecal, i+1,
00629 CRIRES_PROTYPE_WL_POLY, -1, -1, 0)) == NULL) {
00630 cpl_msg_error(__func__, "Cannot load the wavelength table") ;
00631 cpl_msg_indent_less() ;
00632 cpl_frameset_delete(rawframes) ;
00633 cpl_imagelist_delete(comblist[0]) ;
00634 cpl_imagelist_delete(comblist[1]) ;
00635 if (crires_spec_jitter_config.comb_onlyA) {
00636 cpl_imagelist_delete(comblist[2]) ;
00637 cpl_imagelist_delete(comblist[3]) ;
00638 }
00639 if (crires_spec_jitter_config.comb_onlyB) {
00640 cpl_imagelist_delete(comblist[4]) ;
00641 cpl_imagelist_delete(comblist[5]) ;
00642 }
00643 cpl_free(comblist) ;
00644 for (j=0 ; j<CRIRES_NB_DETECTORS ; j++)
00645 cpl_table_delete(extr_tab[j]) ;
00646 cpl_imagelist_delete(prof_list) ;
00647 cpl_imagelist_delete(bgmap_list) ;
00648 cpl_error_set(__func__, CPL_ERROR_ILLEGAL_INPUT) ;
00649 return -1 ;
00650 }
00651 }
00652 } else {
00653
00654 cpl_msg_info(__func__, "Use the science frame sky to calibrate") ;
00655
00656
00657 fname = cpl_frame_get_filename(cpl_frameset_get_frame(rawframes,0)) ;
00658
00659
00660 if (crires_spec_jitter_config.wl_nolimit == 0) {
00661 plist = cpl_propertylist_load(fname, 0) ;
00662 wmin = crires_pfits_get_wlen_min(plist) ;
00663 wmax = crires_pfits_get_wlen_max(plist) ;
00664 cpl_propertylist_delete(plist) ;
00665 if (cpl_error_get_code()) {
00666 wmin = wmax = -1.0 ;
00667 cpl_error_reset() ;
00668 }
00669 } else {
00670 wmin = wmax = -1.0 ;
00671 }
00672
00673
00674 for (i=0 ; i<CRIRES_NB_DETECTORS ; i++) {
00675 cpl_msg_info(__func__, "Calibrate chip number %d", i+1) ;
00676 cpl_msg_indent_more() ;
00677
00678
00679 if (i+1 == 1) wl_ypos = crires_spec_jitter_config.wl_ypos_c1 ;
00680 if (i+1 == 2) wl_ypos = crires_spec_jitter_config.wl_ypos_c2 ;
00681 if (i+1 == 3) wl_ypos = crires_spec_jitter_config.wl_ypos_c3 ;
00682 if (i+1 == 4) wl_ypos = crires_spec_jitter_config.wl_ypos_c4 ;
00683 if (!strcmp(wl_ypos, "")) {
00684
00685 wave_ypos = cpl_vector_new(1) ;
00686 cpl_vector_set(wave_ypos, 0,
00687 (double)(crires_spec_jitter_config.qc_specpos[i])) ;
00688 } else {
00689 if ((wave_ypos = crires_parse_y_positions(wl_ypos)) == NULL) {
00690 cpl_msg_warning(__func__,
00691 "Cannot parse the y_positions value : %s", wl_ypos);
00692
00693 wave_ypos = cpl_vector_new(1) ;
00694 cpl_vector_set(wave_ypos, 0,
00695 (double)(crires_spec_jitter_config.qc_specpos[i])) ;
00696 }
00697 }
00698
00699 wave_tab[i] = crires_wlcalib_sky(fname,
00700 crires_spec_jitter_config.period,
00701 oh_cat, hitran_cat, crires_spec_jitter_config.wl_log,
00702 flat, dark, bpm, detlin,
00703 crires_spec_jitter_config.wstart[i],
00704 crires_spec_jitter_config.wstop[i],
00705 wmin, wmax, i+1,
00706 wave_ypos,
00707 crires_spec_jitter_config.wl_width,
00708 crires_spec_jitter_config.wl_degree,
00709 crires_spec_jitter_config.wl_slitw,
00710 crires_spec_jitter_config.wl_fwhm,
00711 crires_spec_jitter_config.wl_err,
00712 crires_spec_jitter_config.wl_samples,
00713 crires_spec_jitter_config.wl_clean,
00714 crires_spec_jitter_config.wl_xclimit,
00715 crires_spec_jitter_config.wl_ppm,
00716 (i+1==crires_spec_jitter_config.display)) ;
00717 cpl_msg_indent_less() ;
00718 cpl_vector_delete(wave_ypos) ;
00719 }
00720 }
00721
00722
00723 if ((wl_map_loc = crires_wlcalib_gen_wlmap((const cpl_table **)wave_tab))
00724 == NULL) {
00725 cpl_msg_error(__func__, "Cannot compute the Wavelength Map") ;
00726 cpl_frameset_delete(rawframes) ;
00727 cpl_imagelist_delete(comblist[0]) ;
00728 cpl_imagelist_delete(comblist[1]) ;
00729 if (crires_spec_jitter_config.comb_onlyA) {
00730 cpl_imagelist_delete(comblist[2]) ;
00731 cpl_imagelist_delete(comblist[3]) ;
00732 }
00733 if (crires_spec_jitter_config.comb_onlyB) {
00734 cpl_imagelist_delete(comblist[4]) ;
00735 cpl_imagelist_delete(comblist[5]) ;
00736 }
00737 cpl_free(comblist) ;
00738 cpl_imagelist_delete(prof_list) ;
00739 cpl_imagelist_delete(bgmap_list) ;
00740 for (j=0 ; j<CRIRES_NB_DETECTORS ; j++) {
00741 cpl_table_delete(extr_tab[j]) ;
00742 if (wave_tab[j] != NULL) cpl_table_delete(wave_tab[j]);
00743 }
00744 cpl_error_set(__func__, CPL_ERROR_ILLEGAL_INPUT) ;
00745 return -1 ;
00746 }
00747
00748
00749 for (i=0 ; i<CRIRES_NB_DETECTORS ; i++) {
00750 crires_spec_jitter_config.qc_wlcent[i] =
00751 cpl_image_get(cpl_imagelist_get(wl_map_loc, i),
00752 512, crires_spec_jitter_config.qc_specpos[i], &pix) ;
00753 crires_spec_jitter_config.qc_wldisp[i] =
00754 ((cpl_image_get(cpl_imagelist_get(wl_map_loc, i), 1024,
00755 crires_spec_jitter_config.qc_specpos[i], &pix)) -
00756 (cpl_image_get(cpl_imagelist_get(wl_map_loc, i), 1,
00757 crires_spec_jitter_config.qc_specpos[i], &pix)))
00758 / 1023 ;
00759 crires_spec_jitter_config.qc_wlxc[i] =
00760 crires_wlcalib_get_better_xc(wave_tab[i]) ;
00761 }
00762 for (i=0 ; i<CRIRES_NB_DETECTORS ; i++)
00763 if (wave_tab[i] != NULL) cpl_table_delete(wave_tab[i]);
00764
00765
00766 fname = cpl_frame_get_filename(cpl_frameset_get_frame(rawframes,0)) ;
00767 if ((cfg_model != NULL) && (!crires_model_off()) &&
00768 (crires_model_config_check(cfg_model, fname) == 0)) {
00769 cpl_msg_info(__func__, "Call the model to get the wavelength map") ;
00770 cpl_msg_indent_more() ;
00771 wl_map_model_loc = crires_model_wavpix(fname, cfg_model, -1) ;
00772 if (wl_map_model_loc == NULL) {
00773 cpl_msg_warning(__func__, "Model function returns NULL") ;
00774 cpl_error_reset() ;
00775 }
00776 cpl_msg_indent_less() ;
00777 } else {
00778 wl_map_model_loc = NULL ;
00779 }
00780
00781
00782 for (i=0 ; i<CRIRES_NB_DETECTORS ; i++) {
00783 cpl_table_new_column(extr_tab[i], CRIRES_COL_WAVELENGTH,
00784 CPL_TYPE_DOUBLE) ;
00785 for (j=0 ; j<cpl_table_get_nrow(extr_tab[i]) ; j++) {
00786 cpl_table_set_double(extr_tab[i], CRIRES_COL_WAVELENGTH, j,
00787 cpl_image_get(cpl_imagelist_get_const(wl_map_loc, i), j+1,
00788 crires_spec_jitter_config.qc_specpos[i], &pix));
00789 }
00790 }
00791
00792
00793 for (i=0 ; i<CRIRES_NB_DETECTORS ; i++) {
00794 cpl_table_new_column(extr_tab[i], CRIRES_COL_WAVELENGTH_MODEL,
00795 CPL_TYPE_DOUBLE) ;
00796 cpl_table_fill_column_window_double(extr_tab[i],
00797 CRIRES_COL_WAVELENGTH_MODEL, 0,
00798 cpl_table_get_nrow(extr_tab[i]), -1.0) ;
00799 }
00800 if ((cfg_model != NULL) && (!crires_model_off()) && (1)) {
00801 cpl_msg_info(__func__, "Call the model to get the wavelengths") ;
00802 cpl_msg_indent_more() ;
00803 wavelengths = crires_model_wavelengths(
00804 cpl_frame_get_filename(cpl_frameset_get_frame(rawframes,0)),
00805 cfg_model, -1,
00806 (double)(crires_spec_jitter_config.qc_specpos[0]),
00807 wl_map_model_loc) ;
00808 if (wavelengths != NULL) {
00809
00810 for (i=0 ; i<CRIRES_NB_DETECTORS ; i++) {
00811
00812 for (j=0 ; j<cpl_vector_get_size(wavelengths[i]) ; j++) {
00813 cpl_table_set_double(extr_tab[i],
00814 CRIRES_COL_WAVELENGTH_MODEL, j,
00815 cpl_vector_get(wavelengths[i], j)) ;
00816 }
00817 }
00818 for (i=0 ; i<CRIRES_NB_DETECTORS ; i++)
00819 cpl_vector_delete(wavelengths[i]) ;
00820 cpl_free(wavelengths) ;
00821 } else {
00822 cpl_msg_warning(__func__, "Model function returns NULL") ;
00823 cpl_error_reset() ;
00824 }
00825 cpl_msg_indent_less() ;
00826 }
00827
00828
00829 if (crires_spec_jitter_config.std_mode) {
00830 cpl_msg_info(__func__,
00831 "Sensitivity / Conversion / Throughput computation") ;
00832 cpl_msg_indent_more() ;
00833
00834 if ((std_star_tab = crires_load_table_check(std_star, 1,
00835 CRIRES_PROTYPE_PHO_FLUX, -1, -1, 0)) == NULL) {
00836 cpl_msg_error(__func__, "Cannot load the std star flux") ;
00837 } else {
00838
00839 if ((std_star_biv = crires_photom_conv_get_star(std_star_tab,
00840 cpl_frame_get_filename(cpl_frameset_get_frame(rawframes,0))))
00841 == NULL) {
00842 cpl_msg_error(__func__, "Cannot find the star flux") ;
00843 cpl_table_delete(std_star_tab) ;
00844 } else {
00845 cpl_table_delete(std_star_tab) ;
00846
00847 for (i=0 ; i<CRIRES_NB_DETECTORS ; i++) {
00848 if (crires_photom_conv_engine(extr_tab[i], std_star_biv,
00849 i+1, (i+1==crires_spec_jitter_config.display))==0){
00850 crires_spec_jitter_config.qc_convmed[i] =
00851 cpl_table_get_column_median(extr_tab[i],
00852 CRIRES_COL_CONVERSION_RECT) ;
00853 crires_spec_jitter_config.qc_thromed[i] =
00854 cpl_table_get_column_median(extr_tab[i],
00855 CRIRES_COL_THROUGHPUT) ;
00856
00857 if (crires_photom_sens_engine(extr_tab[i],
00858 cpl_frame_get_filename(cpl_frameset_get_frame(
00859 rawframes,0)), -1.0,
00860 (i+1==crires_spec_jitter_config.display))>0) {
00861 crires_spec_jitter_config.qc_sensmed[i] =
00862 cpl_table_get_column_median(extr_tab[i],
00863 CRIRES_COL_SENSITIVITY) ; ;
00864 }
00865 }
00866 }
00867 cpl_bivector_delete(std_star_biv) ;
00868 }
00869 }
00870 cpl_msg_indent_less() ;
00871 }
00872 cpl_frameset_delete(rawframes) ;
00873
00874
00875 cpl_msg_info(__func__, "Save the product") ;
00876 cpl_msg_indent_more() ;
00877 if (crires_spec_jitter_save((const cpl_imagelist **)comblist,
00878 prof_list, bgmap_list,
00879 (const cpl_table **)extr_tab, wl_map_loc, wl_map_model_loc,
00880 parlist, frameset)) {
00881 cpl_msg_error(__func__, "Cannot save the product") ;
00882 cpl_imagelist_delete(prof_list) ;
00883 cpl_imagelist_delete(bgmap_list) ;
00884 for (i=0 ; i<CRIRES_NB_DETECTORS ; i++)
00885 if (extr_tab[i] != NULL) cpl_table_delete(extr_tab[i]) ;
00886 cpl_imagelist_delete(comblist[0]) ;
00887 cpl_imagelist_delete(comblist[1]) ;
00888 if (crires_spec_jitter_config.comb_onlyA) {
00889 cpl_imagelist_delete(comblist[2]) ;
00890 cpl_imagelist_delete(comblist[3]) ;
00891 }
00892 if (crires_spec_jitter_config.comb_onlyB) {
00893 cpl_imagelist_delete(comblist[4]) ;
00894 cpl_imagelist_delete(comblist[5]) ;
00895 }
00896 cpl_free(comblist) ;
00897 cpl_imagelist_delete(wl_map_loc) ;
00898 if (wl_map_model_loc) cpl_imagelist_delete(wl_map_model_loc) ;
00899 cpl_msg_indent_less() ;
00900 cpl_error_set(__func__, CPL_ERROR_ILLEGAL_INPUT) ;
00901 return -1 ;
00902 }
00903 cpl_imagelist_delete(wl_map_loc) ;
00904 if (wl_map_model_loc) cpl_imagelist_delete(wl_map_model_loc) ;
00905 cpl_imagelist_delete(comblist[0]) ;
00906 cpl_imagelist_delete(comblist[1]) ;
00907 if (crires_spec_jitter_config.comb_onlyA) {
00908 cpl_imagelist_delete(comblist[2]) ;
00909 cpl_imagelist_delete(comblist[3]) ;
00910 }
00911 if (crires_spec_jitter_config.comb_onlyB) {
00912 cpl_imagelist_delete(comblist[4]) ;
00913 cpl_imagelist_delete(comblist[5]) ;
00914 }
00915 cpl_free(comblist) ;
00916 cpl_imagelist_delete(prof_list) ;
00917 cpl_imagelist_delete(bgmap_list) ;
00918 for (i=0 ; i<CRIRES_NB_DETECTORS ; i++)
00919 if (extr_tab[i] != NULL) cpl_table_delete(extr_tab[i]) ;
00920 cpl_msg_indent_less() ;
00921
00922
00923 if (cpl_error_get_code()) return -1 ;
00924 else return 0 ;
00925 }
00926
00927
00941
00942 static int crires_spec_jitter_save(
00943 const cpl_imagelist ** images,
00944 const cpl_imagelist * prof,
00945 const cpl_imagelist * bgmap,
00946 const cpl_table ** extr_tab,
00947 const cpl_imagelist * wl_map,
00948 const cpl_imagelist * wl_map_model,
00949 const cpl_parameterlist * parlist,
00950 cpl_frameset * set)
00951 {
00952 cpl_propertylist ** qclists ;
00953 const cpl_frame * ref_frame ;
00954 const char * procat ;
00955 const char * protype ;
00956 cpl_propertylist * inputlist ;
00957 const char * recipe_name = "crires_spec_jitter" ;
00958 int i ;
00959
00960
00961 ref_frame = irplib_frameset_get_first_from_group(set, CPL_FRAME_GROUP_RAW) ;
00962
00963
00964 qclists = cpl_malloc(CRIRES_NB_DETECTORS * sizeof(cpl_propertylist*)) ;
00965 for (i=0 ; i<CRIRES_NB_DETECTORS ; i++) {
00966 qclists[i] = cpl_propertylist_new() ;
00967 cpl_propertylist_append_int(qclists[i], "ESO QC SPECPOS",
00968 crires_spec_jitter_config.qc_specpos[i]) ;
00969 cpl_propertylist_append_int(qclists[i], "ESO QC SPECWREC",
00970 crires_spec_jitter_config.qc_specwrec[i]) ;
00971 cpl_propertylist_append_int(qclists[i], "ESO QC SPECWOPT",
00972 crires_spec_jitter_config.qc_specwopt[i]) ;
00973 cpl_propertylist_append_double(qclists[i], "ESO QC SIGNAL MED",
00974 crires_spec_jitter_config.qc_specoptmed[i]) ;
00975 cpl_propertylist_append_double(qclists[i], "ESO QC S2NMED",
00976 crires_spec_jitter_config.qc_s2nmed[i]) ;
00977 cpl_propertylist_append_double(qclists[i], "ESO QC XCORR",
00978 crires_spec_jitter_config.qc_wlxc[i]) ;
00979 cpl_propertylist_append_double(qclists[i], "ESO QC CENTWL",
00980 crires_spec_jitter_config.qc_wlcent[i]) ;
00981 cpl_propertylist_append_double(qclists[i], "ESO QC DISPWL",
00982 crires_spec_jitter_config.qc_wldisp[i]) ;
00983 cpl_propertylist_append_double(qclists[i], "ESO QC SENSMED",
00984 crires_spec_jitter_config.qc_sensmed[i]) ;
00985 cpl_propertylist_append_double(qclists[i], "ESO QC CONVMED",
00986 crires_spec_jitter_config.qc_convmed[i]) ;
00987 cpl_propertylist_append_double(qclists[i], "ESO QC THROMED",
00988 crires_spec_jitter_config.qc_thromed[i]) ;
00989 cpl_propertylist_append_double(qclists[i], "ESO QC FWHMPIX COMBINED",
00990 crires_spec_jitter_config.qc_fwhm_comb_pix[i]) ;
00991 cpl_propertylist_append_double(qclists[i], "ESO QC FWHMARC COMBINED",
00992 crires_spec_jitter_config.qc_fwhm_comb_as[i]) ;
00993 cpl_propertylist_append_double(qclists[i], "ESO QC FWHMPIX PROFILE",
00994 crires_spec_jitter_config.qc_fwhm_prof_pix[i]) ;
00995 cpl_propertylist_append_double(qclists[i], "ESO QC FWHMARC PROFILE",
00996 crires_spec_jitter_config.qc_fwhm_prof_as[i]) ;
00997 cpl_propertylist_append_double(qclists[i], "ESO QC FWHM DIFF",
00998 crires_spec_jitter_config.qc_fwhm_diff[i]) ;
00999
01000 inputlist = cpl_propertylist_load_regexp(
01001 cpl_frame_get_filename(ref_frame), i+1,
01002 CRIRES_HEADER_EXT_FORWARD, 0) ;
01003 cpl_propertylist_copy_property_regexp(qclists[i], inputlist,
01004 CRIRES_HEADER_EXT_FORWARD, 0) ;
01005 cpl_propertylist_delete(inputlist) ;
01006 }
01007
01008
01009 if (crires_spec_jitter_config.std_mode == 1) {
01010 procat = CRIRES_STD_COMBINED_IMA ;
01011 } else {
01012 procat = CRIRES_OBS_COMBINED_IMA ;
01013 }
01014
01015
01016 crires_image_save(set,
01017 parlist,
01018 set,
01019 images[0],
01020 recipe_name,
01021 procat,
01022 CRIRES_PROTYPE_COMBINED,
01023 crires_spec_jitter_config.period,
01024 NULL,
01025 (const cpl_propertylist **)qclists,
01026 PACKAGE "/" PACKAGE_VERSION,
01027 "crires_spec_jitter_comb.fits") ;
01028
01029
01030 if (crires_spec_jitter_config.std_mode == 1) {
01031 procat = CRIRES_STD_CONTRIBUTION_IMA ;
01032 } else {
01033 procat = CRIRES_OBS_CONTRIBUTION_IMA ;
01034 }
01035
01036
01037 crires_image_save(set,
01038 parlist,
01039 set,
01040 images[1],
01041 recipe_name,
01042 procat,
01043 CRIRES_PROTYPE_CONTRIB,
01044 crires_spec_jitter_config.period,
01045 NULL,
01046 (const cpl_propertylist **)qclists,
01047 PACKAGE "/" PACKAGE_VERSION,
01048 "crires_spec_jitter_contrib.fits") ;
01049
01050
01051 if (crires_spec_jitter_config.comb_onlyA) {
01052
01053 if (crires_spec_jitter_config.std_mode == 1) {
01054 procat = CRIRES_STD_COMBINED_NA_IMA ;
01055 } else {
01056 procat = CRIRES_OBS_COMBINED_NA_IMA ;
01057 }
01058
01059
01060 crires_image_save(set,
01061 parlist,
01062 set,
01063 images[2],
01064 recipe_name,
01065 procat,
01066 CRIRES_PROTYPE_COMBINED,
01067 crires_spec_jitter_config.period,
01068 NULL,
01069 (const cpl_propertylist **)qclists,
01070 PACKAGE "/" PACKAGE_VERSION,
01071 "crires_spec_jitter_comb_noddedA.fits") ;
01072
01073
01074 if (crires_spec_jitter_config.std_mode == 1) {
01075 procat = CRIRES_STD_CONTRIBUTION_NA_IMA ;
01076 } else {
01077 procat = CRIRES_OBS_CONTRIBUTION_NA_IMA ;
01078 }
01079
01080
01081 crires_image_save(set,
01082 parlist,
01083 set,
01084 images[3],
01085 recipe_name,
01086 procat,
01087 CRIRES_PROTYPE_CONTRIB,
01088 crires_spec_jitter_config.period,
01089 NULL,
01090 (const cpl_propertylist **)qclists,
01091 PACKAGE "/" PACKAGE_VERSION,
01092 "crires_spec_jitter_contrib_noddedA.fits") ;
01093 }
01094
01095
01096 if (crires_spec_jitter_config.comb_onlyB) {
01097
01098 if (crires_spec_jitter_config.std_mode == 1) {
01099 procat = CRIRES_STD_COMBINED_NB_IMA ;
01100 } else {
01101 procat = CRIRES_OBS_COMBINED_NB_IMA ;
01102 }
01103
01104
01105 crires_image_save(set,
01106 parlist,
01107 set,
01108 images[4],
01109 recipe_name,
01110 procat,
01111 CRIRES_PROTYPE_COMBINED,
01112 crires_spec_jitter_config.period,
01113 NULL,
01114 (const cpl_propertylist **)qclists,
01115 PACKAGE "/" PACKAGE_VERSION,
01116 "crires_spec_jitter_comb_noddedB.fits") ;
01117
01118
01119 if (crires_spec_jitter_config.std_mode == 1) {
01120 procat = CRIRES_STD_CONTRIBUTION_NB_IMA ;
01121 } else {
01122 procat = CRIRES_OBS_CONTRIBUTION_NB_IMA ;
01123 }
01124
01125
01126 crires_image_save(set,
01127 parlist,
01128 set,
01129 images[5],
01130 recipe_name,
01131 procat,
01132 CRIRES_PROTYPE_CONTRIB,
01133 crires_spec_jitter_config.period,
01134 NULL,
01135 (const cpl_propertylist **)qclists,
01136 PACKAGE "/" PACKAGE_VERSION,
01137 "crires_spec_jitter_contrib_noddedB.fits") ;
01138 }
01139
01140
01141 if (crires_spec_jitter_config.std_mode == 1) {
01142 procat = CRIRES_STD_EXTRACT_PROFILE_IMA ;
01143 } else {
01144 procat = CRIRES_OBS_EXTRACT_PROFILE_IMA ;
01145 }
01146
01147
01148 crires_image_save(set,
01149 parlist,
01150 set,
01151 prof,
01152 recipe_name,
01153 procat,
01154 CRIRES_PROTYPE_PROFILE,
01155 crires_spec_jitter_config.period,
01156 NULL,
01157 (const cpl_propertylist **)qclists,
01158 PACKAGE "/" PACKAGE_VERSION,
01159 "crires_spec_jitter_prof.fits") ;
01160
01161
01162 if (crires_spec_jitter_config.std_mode == 1) {
01163 procat = CRIRES_STD_EXTRACT_BGMAP_IMA ;
01164 } else {
01165 procat = CRIRES_OBS_EXTRACT_BGMAP_IMA ;
01166 }
01167
01168
01169 crires_image_save(set,
01170 parlist,
01171 set,
01172 bgmap,
01173 recipe_name,
01174 procat,
01175 CRIRES_PROTYPE_BGD_MAP,
01176 crires_spec_jitter_config.period,
01177 NULL,
01178 (const cpl_propertylist **)qclists,
01179 PACKAGE "/" PACKAGE_VERSION,
01180 "crires_spec_jitter_bgmap.fits") ;
01181
01182
01183 if (crires_spec_jitter_config.std_mode == 1) {
01184 procat = CRIRES_STD_WL_MAP_IMA ;
01185 } else {
01186 procat = CRIRES_OBS_WL_MAP_IMA ;
01187 }
01188
01189
01190 crires_image_save(set,
01191 parlist,
01192 set,
01193 wl_map,
01194 recipe_name,
01195 procat,
01196 CRIRES_PROTYPE_WL_MAP,
01197 crires_spec_jitter_config.period,
01198 NULL,
01199 (const cpl_propertylist **)qclists,
01200 PACKAGE "/" PACKAGE_VERSION,
01201 "crires_spec_jitter_wlmap.fits") ;
01202
01203 if (wl_map_model != NULL) {
01204
01205 if (crires_spec_jitter_config.std_mode == 1) {
01206 procat = CRIRES_STD_WL_MAP_MODEL_IMA ;
01207 } else {
01208 procat = CRIRES_OBS_WL_MAP_MODEL_IMA ;
01209 }
01210
01211
01212 crires_image_save(set,
01213 parlist,
01214 set,
01215 wl_map_model,
01216 recipe_name,
01217 procat,
01218 CRIRES_PROTYPE_WL_MAP,
01219 crires_spec_jitter_config.period,
01220 NULL,
01221 (const cpl_propertylist **)qclists,
01222 PACKAGE "/" PACKAGE_VERSION,
01223 "crires_spec_jitter_wlmap_model.fits") ;
01224 }
01225
01226
01227
01228 if (cpl_table_has_column(extr_tab[0], CRIRES_COL_SENSITIVITY)) {
01229 procat = CRIRES_EXTRACT_SENS_TAB ;
01230 protype = CRIRES_PROTYPE_SENSIT ;
01231 } else if (cpl_table_has_column(extr_tab[0],CRIRES_COL_CONVERSION_OPT)){
01232 procat = CRIRES_EXTRACT_CONV_TAB ;
01233 protype = CRIRES_PROTYPE_CONVERS ;
01234 } else if (crires_spec_jitter_config.std_mode == 1) {
01235 procat = CRIRES_STD_EXTRACT_WL_TAB ;
01236 protype = CRIRES_PROTYPE_SPEC_WL ;
01237 } else {
01238 procat = CRIRES_OBS_EXTRACT_WL_TAB ;
01239 protype = CRIRES_PROTYPE_SPEC_WL ;
01240 }
01241 crires_table_save(set,
01242 parlist,
01243 set,
01244 extr_tab,
01245 recipe_name,
01246 procat,
01247 protype,
01248 NULL,
01249 (const cpl_propertylist **)qclists,
01250 PACKAGE "/" PACKAGE_VERSION,
01251 "crires_spec_jitter_extracted.fits") ;
01252
01253
01254 for (i=0 ; i<CRIRES_NB_DETECTORS ; i++) {
01255 cpl_propertylist_delete(qclists[i]) ;
01256 }
01257 cpl_free(qclists) ;
01258 return 0;
01259 }
01260