xsh_cfg_recover.c File Reference

#include <xsh_error.h>
#include <xsh_utils.h>
#include <xsh_msg.h>
#include <xsh_dfs.h>
#include <xsh_drl.h>
#include <xsh_pfits.h>
#include <cpl.h>
#include <math.h>
#include <xsh_data_resid_tab.h>
#include <xsh_utils_table.h>
#include <xsh_model_kernel.h>
#include <xsh_model_utils.h>
#include <xsh_model_io.h>
#include <xsh_spectrum.h>
#include <xsh_fit.h>
#include <stdlib.h>

Go to the source code of this file.

Macros
#define	RECIPE_ID   "xsh_cfg_recover"
#define	RECIPE_AUTHOR   "A. Modigliani, P. Bristow"
#define	RECIPE_CONTACT   "amodigli@eso.org"
#define	XSH_THE_TAB_SUB_VIS   "XSH_THE_TAB_VIS"
#define	XSH_THE_TAB_SUB_UVB   "XSH_THE_TAB_UVB"
#define	XSH_THE_TAB_SUB_NIR   "XSH_THE_TAB_NIR"
#define	XSH_STARTUP_TABLE_COLNAME_X   "X"
#define	XSH_ORDPOS_POL_DIM_MAX   4

Functions
static int	xsh_cfg_recover_create (cpl_plugin *plugin)
	Setup the recipe options.
static int	xsh_cfg_recover_exec (cpl_plugin *plugin)
	Execute the plugin instance given by the interface.
static int	xsh_cfg_recover_destroy (cpl_plugin *plugin)
	Destroy what has been created by the 'create' function.
static int	xsh_cfg_recover_last_step (cpl_parameterlist *parameters, cpl_frameset *frameset, xsh_instrument *instrument, cpl_frameset *raws, cpl_frameset *calib)
	Interpret the command line options and execute the data processing.
static cpl_error_code	xsh_cfg_recover_driver (cpl_parameterlist *parameters, cpl_frameset *frameset)
int	cpl_plugin_get_info (cpl_pluginlist *list)
	Build the list of available plugins, for this module.
xsh_cfg_recover_prepare_pm_set
Prepare data for pattern matching Parameters tab_xy_guess table containing xy pattern tab_xy_peaks_sel table containing xy data parameters recipe parameters mat_gue matrix catalog (output) mat_msr matrix data (output) Returns error code status
static cpl_error_code	xsh_cfg_recover_prepare_pm_set (cpl_table *tab_pat, cpl_table *tab_dat, cpl_parameterlist *parameters, cpl_matrix **mat_pat, cpl_matrix **mat_dat, int *use_pat, int *use_dat)
xsh_cfg_recover_model_THE_create
creates the model THE table corresponding to the best found model configuration Parameters config_frame frame of annealed model configuration parameters xsh_instrument instrument instrument ARM setting wave_list input frame wavelength list THE1_frm THE map for central pinhole THE9_frm THE map for 9 pinholes Returns model_THE_frm output model THE table corresponding to line list and annealed model configuration or NULL if failure THIS IS ESSENTIALLY A WRAPPER FOR xsh_model_THE_create
static cpl_error_code	xsh_cfg_recover_model_THE_create (cpl_frame *config_frame, xsh_instrument *instrument, cpl_frame *wave_list, cpl_frame **THE1, cpl_frame **THE9)
xsh_cfg_recover_pattern_match
Select lines using pattern matching technique Parameters parameters recipe input parameters mat_cat matrix catalog mat_dat matrix data use_pattern starting number of searched pattern points use_data starting number of searched data points debug_level debug level Returns cpl_error_code
static cpl_error_code	xsh_cfg_recover_pattern_match (cpl_parameterlist *parameters, cpl_matrix *mat_gue, cpl_matrix *mat_dat, int use_pattern, int use_data, int debug_level)
xsh_cfg_recover_guess_tab_corr_by_user
Applies user X-Y offset to guess Parameters parameters recipe input parameters model-xy_guess input/outup table frame Returns error code status
static cpl_error_code	xsh_cfg_recover_guess_tab_corr_by_user (cpl_parameterlist *parameters, cpl_frame **model_xy_gue)
xsh_cfg_recover_measure_line_xy_fit
Measure lines x,y positions with a Gaussian fit on the raw_frm Parameters raw_frm the input raw formatcheck frame (pre-overscan removed) parameters the recipe input parameters guess the guess table frame to be corrected after line measurements debug_level debug level Returns error code status ONLY USED BY GFIT METHOD
static cpl_error_code	xsh_cfg_recover_measure_line_xy_fit (cpl_frame *raw_frm, cpl_parameterlist *parameters, cpl_frame **model_xy_gue, int debug_level)
xsh_cfg_recover_add_peaks_xpos
Add peaks x positions by taking into account of order polynomial Parameters order_tab_centr the input order table frame tab_xy_peaks the input table with line IDs Returns the input table with added x positions corresponding to y positions
static cpl_error_code	xsh_cfg_recover_add_peaks_xpos (cpl_frame *order_tab_centr, xsh_instrument *instr, cpl_table **tab_xy_peaks)
xsh_cfg_recover_remove_blends
Remove blended lines from input line catalog Parameters tab_xy_guess the input table with line IDs tab_xy_peaks_sel the input table with line peaks thresh_x x radii for peaks match search thresh_y y radii for peaks match search Returns a cleaned table.
static cpl_table *	xsh_cfg_recover_remove_blends (cpl_table *tab_xy_guess, cpl_table *tab_xy_peaks_sel, const int thresh_x, const int thresh_y)
xsh_cfg_recover_measure_tab_xy_peaks
Determines line peaks in an input image frame Parameters ima_ext the input image (with spectra describing extracted orders) parameters the recipe input parameters Returns table containing line peaks positions
static cpl_table *	xsh_cfg_recover_measure_tab_xy_peaks (cpl_image *ima_ext, cpl_parameterlist *parameters)
xsh_cfg_recover_select_peaks
Select lines from input line catalog whose Y interdistance is greater than a threshold Parameters tab_xy_guess the input table with line IDs tab_xy_peaks_sel the input table with line peaks Returns a cleaned table.
static cpl_table *	xsh_cfg_recover_select_peaks (cpl_table *tab_xy_guess, cpl_table *tab_xy_peaks, const double factor)
xsh_cfg_recover_extend_xy_pos_frm
Add columns to properly match with outher functions used later Parameters frm the input table frame Returns error code status
static cpl_error_code	xsh_cfg_recover_extend_xy_pos_frm (cpl_frame **frm, xsh_instrument *instrument)
xsh_cfg_recover_measure_line_xy
Measure lines x,y positions Parameters raw_frm the input raw formatcheck frame (pre-overscan removed) instr instrument setting order_tab_centr input raw order-flat frame (pre-overscan removed) parameters the recipe input parameters guess guess table frame to be corrected after line measurements Returns error code status
static cpl_error_code	xsh_cfg_recover_measure_line_xy (cpl_frame *frame, xsh_instrument *inst, cpl_frame *order_tab_centr, cpl_parameterlist *parameters, const char *method, cpl_frame *model_config, cpl_frame **guess, int debug_level)
xsh_cfg_recover_gen_xyg
generates a table frame with x-y guess predictions Parameters lines_tab the input reference line table p_xs_3_config a pouinter to the XSH model configuration structure inst the XSH instrument setting lines_xyg the output table with the model x-y guess positions Returns 0 if everything is ok, -1 in error case This recipe return an allocated table.
static cpl_error_code	xsh_cfg_recover_gen_xyg (cpl_table *lines_tab, struct xs_3 *p_xs_3_config, xsh_instrument *inst, int pre_scan, cpl_table **lines_gue)
xsh_cfg_recover_gen_xyg_frame
generates a table frame with x-y guess predictions Parameters wave_list the input reference line list config_frame the XSH model configuration frame inst the XSH instrument setting Returns 0 if everything is ok, -1 in error case
static cpl_frame *	xsh_cfg_recover_gen_xyg_frame (cpl_frame *wave_list, cpl_frame *config_frame, xsh_instrument *instr, int prescan)
xsh_cfg_recover_linear_ext
Determines extracted spectra Parameters raw_frm the input image frame to be extracted order_tab_centr the order table frame tracing the frame order instr the instrument setting slit the extraction slit parameters the recipe input parameters Returns table containing line peaks positions This function allocates an image
static cpl_image *	xsh_cfg_recover_linear_ext (cpl_frame *raw_frm, cpl_frame *order_tab_centr, xsh_instrument *instr, const int slit, const double thresh_min)
xsh_cfg_recover_guess_tab_corr_by_ordpos
Correct model guess X positions taking into account of order traces Parameters instr the instrument setting order_tab_centr the order table frame tracing the frame order model_xy_gue the guess table whose X positions are being corrected debug_level debug level Returns cpl_error_code
static cpl_error_code	xsh_cfg_recover_guess_tab_corr_by_ordpos (xsh_instrument *instr, cpl_frame *order_tab_centr, cpl_frame **model_xy_gue)

Variables
static char	xsh_cfg_recover_description_short []
static char	xsh_cfg_recover_description []