MUSE Pipeline Reference Manual  0.18.5
Modules
Here is a list of all modules:
oFast Image Reconstruction
oArtifact handling
oAstronomical tools
oBasic-processing function
oCombination of images
oCPL wrappers
oDAR (Differential Atmospheric Refraction)
oExternal FITS table formats
oDatacube handling
oFlux calibration
oGeometrical calibration
oImage handling for the MUSE format
oImagelist processing for the four-extension image format
oLine Spread Function related functions
oProtected access to FITS headers
oPixel grid
oPixel table handling
oPost-processing functions
oProcessing framework
oQuadrants and other CCD regions
oQuality flag handling
oResampling
oSky subtraction
oTracing
oUtilities
oWavelength calibration
oWorld coordinate system (WCS) related functions
oXposure combination
oTool muse_badpix_from_asciimuse_badpix_from_ascii: Convert an ASCII list to a BADPIX_TABLE
oTool muse_badpix_from_dqmuse_badpix_from_dq: Convert the DQ image extension to a BADPIX_TABLE
oTool muse_badpix_from_regionmuse_badpix_from_region: Convert a region to a BADPIX_TABLE
oTool muse_fill_imagemuse_fill_image: fill a MUSE three-extension image with constant(s)
oTool muse_geo_plotmuse_geo_plot: Plot the contents of a MUSE geometry table
oTool muse_image_fwhmimuse_mage_fwhm: Determine FWHM on objects in a (collapsed) image
oTool muse_lsf_fwhmmuse_lsf_fwhm: Determine FWHM of a line from given LSF
oTool muse_makeimamuse_makeima: standalone quick image reconstruction
oTool muse_pixtable_cropmuse_pixtable_crop: Crop a MUSE pixel table in one or more dimensions
oTool muse_pixtable_dumpmuse_pixtable_dump: Display a MUSE pixel table on the screen
oTool muse_pixtable_erase_slicemuse_pixtable_erase_slice: Erase a slice of one IFU from a MUSE pixel table
oTool muse_trace_plot_samplesmuse_trace_plot_samples: Plot tracing sample points
oTool muse_trace_plot_widthsmuse_trace_plot_widths: Plot tracing widths
oTool muse_wave_plot_columnmuse_wave_plot_column: Plot wavelength calibration for one CCD column
oTool muse_wave_plot_residualsmuse_wave_plot_residuals: Plot wavelength calibration residuals
oRecipe muse_ampl: Determine the instrumental throughput from exposures taken with the pico-amplifier / photo diode readings.
oRecipe muse_astrometry: Compute an astrometric solution.
oRecipe muse_bias: Combine several separate bias images into one master bias file.
oRecipe muse_create_sky: Create night sky model from selected pixels of an exposure of empty sky.
oRecipe muse_dark: Combine several separate dark images into one master dark file and locate hot pixels.
oRecipe muse_exp_combine: Combine several exposures into one datacube.
oRecipe muse_flat: Combine several separate flat images into one master flat file, trace slice locations, and locate dark pixels.
oRecipe muse_geometry: Compute relative location of the slices within the field of view and measure the instrumental PSF on the detectors.
oRecipe muse_qi_mask: Create image masks for use with the quick image reconstruction.
oRecipe muse_quick_image: Carry out quick image reconstruction: create an image of the field of view in the fastest possible way for a visual check of the telescope pointing.
oRecipe muse_scibasic: Remove the instrumental signature from the data of each CCD and convert them from an image into a pixel table.
oRecipe muse_scipost_apply_astrometry: Calibrate astrometry for MUSE pixel tables.
oRecipe muse_scipost_calibrate_flux: Calibrate flux for MUSE pixel tables.
oRecipe muse_scipost_combine_pixtables: Combine MUSE pixel tables, either from different IFUs, or from different exposures, or both.
oRecipe muse_scipost_correct_dar: Apply DAR correction for MUSE pixel tables.
oRecipe muse_scipost_make_cube: Make a MUSE cube from a MUSE pixel table.
oRecipe muse_scipost_subtract_sky: Subtract night sky model.
oRecipe muse_scipost: Prepare reduced and combined science products.
oRecipe muse_sky_lsf: Compute the LSF
oRecipe muse_skyflat: Combine several separate (twilight) sky flat-fields into one master skyflat, and compute the integrated flux within the given wavelength range of the IFU.
oRecipe muse_standard: Create a flux response curve from a standard star exposure.
\Recipe muse_wavecal: Detect arc emission lines and determine the wavelength solution, and optionally the LSF, for each slice.