36#include "visir_recipe.h"
37#include "visir_spectro.h"
38#include "visir_spc_distortion.h"
39#include "visir_spc_photom.h"
47#define RECIPE_STRING "visir_old_spc_phot"
50#define RECIPE_KEYS_REGEXP_ALL \
51 VISIR_PFITS_REGEXP_IMG_RECOMBINE \
52 "|" VISIR_PFITS_REGEXP_SPC_GET_RES_WL \
53 "|" VISIR_PFITS_REGEXP_SPC_SENSIT
56#define RECIPE_KEYS_REGEXP \
57 RECIPE_KEYS_REGEXP_ALL \
58 "|" VISIR_PFITS_SPC_PHOT_COPY \
59 "|" VISIR_PFITS_REGEXP_CAPA \
60 "|" VISIR_PFITS_REGEXP_SPC_PHOT_PAF
63#define RECIPE_KEYS_REGEXP_WCS \
65 "|" IRPLIB_PFITS_WCS_REGEXP
70static cpl_error_code visir_spc_phot_save(cpl_frameset *,
71 const cpl_parameterlist *,
72 const cpl_propertylist *,
73 const cpl_propertylist *,
78VISIR_RECIPE_DEFINE(visir_old_spc_phot,
79 VISIR_PARAM_EMIS_TOL |
80 VISIR_PARAM_REFINE | VISIR_PARAM_XCORR |
81 VISIR_PARAM_OFFSETS | VISIR_PARAM_OBJECTS |
82 VISIR_PARAM_NODPOS | VISIR_PARAM_AUTOBPM |
83 VISIR_PARAM_GLITCH | VISIR_PARAM_PURGE |
84 VISIR_PARAM_UNION | VISIR_PARAM_REJECT |
85 VISIR_PARAM_STRIPITE | VISIR_PARAM_STRIPMOR |
86 VISIR_PARAM_PLOT | VISIR_PARAM_SLITSKEW |
87 VISIR_PARAM_SPECSKEW | VISIR_PARAM_VERTARC |
88 VISIR_PARAM_REJLEFT | VISIR_PARAM_REJRIGHT |
89 VISIR_PARAM_HORIARC | VISIR_PARAM_FIXCOMBI |
90 VISIR_PARAM_GAIN | VISIR_PARAM_RONOISE |
91 VISIR_PARAM_OXSIGMA | VISIR_PARAM_OXNITER |
92 VISIR_PARAM_OXSMOOTH | VISIR_PARAM_OXKERNEL,
93 "Old DRS detector: Sensitivity computation in spectroscopy",
94 "This recipe estimates the dispersion relation using the "
95 "atmospheric spectrum\n"
96 "in a long-slit spectroscopy half-cycle frame.\n"
97 "It also extracts the spectrum of an observed object "
98 "using a combined frame.\n"
99 "Lastly, it computes the spectral photometry of an "
100 "observed standard star.\n"
101 "The files listed in the Set Of Frames (sof-file) "
103 "VISIR-Long-Slit-Spectroscopy-file.fits "
104 VISIR_SPC_PHOT_RAW
"\n"
105 "VISIR-Quantum-Efficiency-Calibration-file.fits "
106 VISIR_CALIB_QEFF_SPC
"\n"
107 "VISIR-Atmospheric-Emission-Lines-Calibration-file.fits "
108 VISIR_CALIB_LINES_SPC
110 "VISIR-Spectroscopic-Standard-Star-Catalog.fits "
111 VISIR_CALIB_STDSTAR_SPC
"\n"
112 MAN_VISIR_CALIB_BPM_SPC);
132static int visir_old_spc_phot(cpl_frameset * framelist,
133 const cpl_parameterlist * parlist)
135 irplib_framelist * allframes = NULL;
136 irplib_framelist * rawframes = NULL;
137 cpl_propertylist * qclist = cpl_propertylist_new();
138 cpl_propertylist * paflist = cpl_propertylist_new();
140 const char * star_cat;
141 const char * spc_cal_qeff;
142 const char * spc_cal_lines;
144 cpl_image ** combinedpair = NULL;
145 cpl_image * combined = NULL;
146 cpl_table * tab = NULL;
147 cpl_image * weight2d = NULL;
148 double wlen, slitw, temp, fwhm;
149 visir_spc_resol resol;
150 visir_spc_config config;
151 cpl_boolean drop_wcs;
152 const char * keys_regexp =
"^(" RECIPE_KEYS_REGEXP_WCS
153 "|" VISIR_PFITS_REGEXP_DIT
155 const char * dit_key = VISIR_PFITS_DOUBLE_DIT;
158 config.recipename = RECIPE_STRING;
159 config.parlist = parlist;
160 config.orderoffset = 0;
164 parlist, RECIPE_STRING, VISIR_PARAM_FIXCOMBI);
166 parlist, RECIPE_STRING, VISIR_PARAM_PLOT);
168 parlist, RECIPE_STRING, VISIR_PARAM_SLITSKEW);
170 parlist, RECIPE_STRING, VISIR_PARAM_SPECSKEW);
172 parlist, RECIPE_STRING, VISIR_PARAM_VERTARC);
174 parlist, RECIPE_STRING, VISIR_PARAM_HORIARC);
176 parlist, RECIPE_STRING, VISIR_PARAM_GAIN);
178 parlist, RECIPE_STRING, VISIR_PARAM_RONOISE);
180 parlist, RECIPE_STRING, VISIR_PARAM_OXSIGMA);
182 parlist, RECIPE_STRING, VISIR_PARAM_OXNITER);
184 parlist, RECIPE_STRING, VISIR_PARAM_OXSMOOTH);
186 parlist, RECIPE_STRING, VISIR_PARAM_OXKERNEL);
188 parlist, RECIPE_STRING, VISIR_PARAM_EMIS_TOL);
189 config.bkgcorrect = CPL_FALSE;
197 allframes = irplib_framelist_cast(framelist);
198 skip_if (allframes == NULL);
199 rawframes = irplib_framelist_extract(allframes, VISIR_SPC_PHOT_RAW);
200 skip_if (rawframes == NULL);
202 irplib_framelist_empty(allframes);
204 skip_if(irplib_framelist_load_propertylist(rawframes, 0, 0, keys_regexp,
207 skip_if(irplib_framelist_load_propertylist_all(rawframes, 0,
"^("
208 RECIPE_KEYS_REGEXP_ALL
209 "|" VISIR_PFITS_REGEXP_DIT
216 if (cpl_propertylist_has(irplib_framelist_get_propertylist(rawframes, 0),
217 VISIR_PFITS_DOUBLE_SEQ1_DIT))
218 dit_key = VISIR_PFITS_DOUBLE_SEQ1_DIT;
222 star_cat = irplib_frameset_find_file(framelist, VISIR_CALIB_STDSTAR_SPC);
223 if (star_cat == NULL) {
224 cpl_msg_error(cpl_func,
"The file with the star catalog is missing");
228 visir_data_type data_type;
229 const cpl_frame * frm = irplib_framelist_get_const(rawframes, 0);
230 cpl_propertylist * plist = irplib_framelist_get_propertylist(rawframes, 0);
231 skip_if(visir_get_data_type(frm, plist, &data_type, NULL));
234 spc_cal_qeff = irplib_frameset_find_file(framelist, VISIR_CALIB_QEFF_SPC);
237 spc_cal_lines = irplib_frameset_find_file(framelist, VISIR_CALIB_LINES_SPC);
240 badpix = irplib_frameset_find_file(framelist, VISIR_CALIB_BPM);
243 flat = irplib_frameset_find_file(framelist, VISIR_CALIB_FLAT);
246 resol = visir_spc_get_res_wl(rawframes, &wlen, &slitw, &temp, &fwhm,
247 visir_data_is_aqu(data_type));
251 if (resol == VISIR_SPC_R_GHR) {
252 cpl_msg_error(cpl_func,
"This recipe cannot reduce HR Grism data");
253 visir_error_set(CPL_ERROR_TYPE_MISMATCH);
259 flat, CPL_GEOM_FIRST, &drop_wcs,
260 !config.do_fixcombi, wlen, resol);
262 if (combinedpair == NULL) {
263 cpl_msg_error(cpl_func,
"Could not combine the input frames");
267 cpl_image_delete(combinedpair[1]);
268 combined = cpl_image_cast(combinedpair[0], CPL_TYPE_DOUBLE);
269 cpl_image_delete(combinedpair[0]);
274 cpl_msg_info(cpl_func,
"Compute the sensitivity");
277 star_cat, spc_cal_lines,
278 spc_cal_qeff, &weight2d, qclist,
279 CPL_FALSE, wlen, slitw, temp, fwhm,
283 cpl_msg_error(cpl_func,
"Cannot compute sensitivity: '%s' in %s",
284 cpl_error_get_message(), cpl_error_get_where());
288 bug_if (visir_spectro_qc(qclist, paflist, drop_wcs, rawframes,
289 "^(" VISIR_PFITS_SPC_PHOT_COPY
")$",
290 "^(" VISIR_PFITS_REGEXP_SPC_PHOT_PAF
")$"));
291 irplib_framelist_empty(rawframes);
294 cpl_msg_info(cpl_func,
"Save the results");
297 bug_if (cpl_propertylist_append_string(paflist, CPL_DFS_PRO_CATG,
298 VISIR_SPC_PHOT_COMBINED_PROCATG));
300 skip_if (visir_spc_phot_save(framelist, parlist, qclist, paflist,
301 combined, weight2d, tab));
305 cpl_propertylist_delete(qclist);
306 cpl_propertylist_delete(paflist);
307 irplib_framelist_delete(allframes);
308 irplib_framelist_delete(rawframes);
309 cpl_image_delete(combined);
310 cpl_table_delete(tab);
311 cpl_image_delete(weight2d);
313 cpl_free(combinedpair);
315 return cpl_error_get_code();
331static cpl_error_code visir_spc_phot_save(cpl_frameset * set,
332 const cpl_parameterlist * parlist,
333 const cpl_propertylist * qclist,
334 const cpl_propertylist * paflist,
335 const cpl_image * combined,
336 const cpl_image * weight2d,
337 const cpl_table * table)
343 skip_if (irplib_dfs_save_table(set, parlist, set, table, NULL, RECIPE_STRING,
344 VISIR_SPC_PHOT_TAB_PROCATG,
345 qclist, NULL, visir_pipe_id,
346 RECIPE_STRING
"_tab" CPL_DFS_FITS));
349 skip_if (irplib_dfs_save_image(set, parlist, set, combined, CPL_BPP_IEEE_FLOAT,
350 RECIPE_STRING, VISIR_SPC_PHOT_COMBINED_PROCATG,
351 qclist, NULL, visir_pipe_id,
352 RECIPE_STRING CPL_DFS_FITS));
355 skip_if (irplib_dfs_save_image(set, parlist, set, weight2d, CPL_BPP_IEEE_FLOAT,
356 RECIPE_STRING, VISIR_SPC_PHOT_WEIGHT_PROCATG,
357 qclist, NULL, visir_pipe_id,
358 RECIPE_STRING
"_weight" CPL_DFS_FITS));
363 skip_if (cpl_dfs_save_paf(
"VISIR", RECIPE_STRING, paflist,
364 RECIPE_STRING CPL_DFS_PAF));
366 bug_if(paflist == NULL);
371 return cpl_error_get_code();
cpl_error_code visir_dfs_check_framelist_tag(const irplib_framelist *self)
Check the tags in a frameset (group raw only)
int visir_dfs_set_groups(cpl_frameset *set)
Set the group as RAW or CALIB in a frameset.
int visir_parameterlist_get_int(const cpl_parameterlist *self, const char *recipe, visir_parameter bitmask)
Retrieve the value of a VISIR integer parameter.
double visir_parameterlist_get_double(const cpl_parameterlist *self, const char *recipe, visir_parameter bitmask)
Retrieve the value of a VISIR parameter of type double.
cpl_boolean visir_parameterlist_get_bool(const cpl_parameterlist *self, const char *recipe, visir_parameter bitmask)
Retrieve the value of a VISIR boolean parameter.
cpl_table * visir_spc_phot_sensit_from_image(cpl_image **combined, const irplib_framelist *rawframes, const visir_spc_config *pconfig, const char *star_cat, const char *spc_cal_lines, const char *spc_cal_qeff, cpl_image **pweight2d, cpl_propertylist *qclist, cpl_boolean do_ech, double wlen, double slitw, double temp, double fwhm, const visir_spc_resol resol, const char *dit_key)
Extract spectrum from image and compute sensitivity.